NAME¶

trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

SYNOPSIS¶

trna2sap [ -] [ -a] [ -c str] [ -f  str] [ -i filename] [ -j] [ -m str] [ -n str] [ -o  filename] [ -p dir] [ -r  dir] [ -s] [ -t str] [ -u] [ -x str]

DESCRIPTION¶

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.

OPTIONS¶

A summary of options is included below.

-

Print usage message

-a

Add tRNAscan-SE citation

-c str

Comment

-f str

Substring Filter

-i filename

Single Input file (standard input by default)

-j

Just produce a five-column feature table, à la trna2tbl(1).

-m str

ReMark

-n str

Annotation Name (normally “tRNA”).

-o filename

Single Output file (standard output by default)

-p dir

Path to files

-r dir

Path for Results

-s

Ignore Pseudo tRNAs

-t str

Annotation Title (normally “tRNAscan-SE”).

-u

Ignore Undetermined tRNAs

-x str

File selection suffix with -p (.trna by default).

AUTHOR¶

The National Center for Biotechnology Information.

SEE ALSO¶

sequin(1), tbl2asn(1), trna2tbl(1).