NAME¶

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS¶

nps2gps [ -] [ -D] [ -F] [ -G str] [ -L] [ -N] [ -P] [ -Q] [ -R] [ -T] [ -U] [ -f str] [ -i filename] [ -o  filename] [ -p path] [ -r  path] [ -x str]

DESCRIPTION¶

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS¶

A summary of options is included below.

-

Print usage message

-D

RefSeq mRNA Titles

-F

Map by Feature ID

-G str

General ID database name

-L

Lock components in advance

-N

Promote Non-coding RNAs

-P

mRNA ID from Protein

-Q

Special mRNA titles

-R

Enable Remote fetching from ID

-T

Map by Transcript ID

-U

Remove Unnecessary gene cross-references

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

AUTHOR¶

The National Center for Biotechnology Information.

SEE ALSO¶

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).