NAME¶
insdseqget - format sequences from GenBank as an XML INSDSet
SYNOPSIS¶
insdseqget [
-] [
-d filename] [
-i filename] [
-m n/p/b] [
-n] [
-o filename] [
-v]
DESCRIPTION¶
insdseqget retrieves biological sequence data from GenBank (according to
an input list of GI accession numbers) and prints it out as an XML INSDSet
document.
OPTIONS¶
A summary of options is included below.
- -
- Print usage message
- -d filename
- Input file name for date list (desired accessions, one per line, followed
by a blank line and a list of allowed dates, also one per line)
- -i filename
- Input file name for GI list (default = stdin)
- -m n/p/b
- Molecule type:
- n
- Nucleotide (default)
- p
- Protein
- b
- Both
- -n
- Return only new records (for which the given GI refers to an old
version)
- -o filename
- Output file name for the XML INSDSet (default = stdout)
- -v
- Fetch SNP Variations
AUTHOR¶
The National Center for Biotechnology Information.
SEE ALSO¶
asn2gb(1),
gbseqget(1).