NAME¶
fastaselect - select fasta sequences in a file
DESCRIPTION¶
This script selects fasta sequences in a file according to names given in a name
file. Given a FASTA file (and possibly a FASTA quality file) and a file with
names of reads, select the sequences from the input FASTA (and quality file)
and writes them to an output FASTA.
If fasta quality file is present (same basename, but with .qual appended), then
also selects sequences from there.
Please check out the documentation below for more detailed information.
SYNOPSIS¶
fastaselect
<options>
OPTIONS¶
- -infile
- name filename containing all fasta sequences
- -name
- name filename containing all names of sequences to select
- -outfile name
- filename where to write selcted sequences to
SEE ALSO¶
fastqselect(1)
A more extensive documentation is provided in the mira-doc package and can be
found at /usr/share/doc/mira-assembler/DefinitiveGuideToMIRA.html.
You can also subscribe one of the MIRA mailing lists at
- http://www.chevreux.org/mira_mailinglists.html
After subscribing, mail general questions to the MIRA talk mailing list:
- mira_talk@freelists.org
BUGS¶
To report bugs or ask for features, please use the new ticketing system at:
- http://sourceforge.net/apps/trac/mira-assembler/
AUTHOR¶
The author of the mira code is Bastien Chevreux <bach@chevreux.org>
This manual page was written by Andreas Tille <tille@debian.org> but can
be freely used for any other distribution.
