NAME¶
libpwiz - library to perform proteomics data analyses (runtime)
DESCRIPTION¶
This manual page documents briefly the
libpwiz package that brings a
library library to perform proteomics data analyses. ProteoWizard provides a
modular and extensible set of open-source, cross-platform tools and libraries.
The tools perform proteomics data analyses; the libraries enable rapid tool
creation by providing a robust, pluggable development framework that
simplifies and unifies data file access, and performs standard chemistry and
LCMS dataset computations.
EXAMPLES OF BINARIES -Ipwiz/data/msdata/ramp¶
All these programs (in `/usr/lib/libpwizX/example-files' could be built using
the command line shown after the binary name:
- mscat (g++ -I /usr/include/libpwiz -l pwiz mscat.cpp -o mscat)
- hello_analyzer_2 (g++ -I /usr/include/libpwiz -l pwiz hello_analyzer_2.cpp -o
hello_analyzer_2)
- hello_analyzer (g++ -I /usr/include/libpwiz -l pwiz hello_analyzer.cpp -o
hello_analyzer)
- hello_msdata (g++ -I /usr/include/libpwiz -l pwiz hello_msdata.cpp -o
hello_msdata)
- txt2mzml (g++ -I /usr/include/libpwiz -l pwiz -l boost_filesystem -l
boost_system txt2mzml.cpp -o txt2mzml)
- hello_ramp (g++ -I /usr/include/libpwiz -I
/usr/include/libpwiz/pwiz/data/msdata/ramp -l pwiz hello_ramp.cpp -o
hello_ramp)
- write_example_files (g++ -I /usr/include/libpwiz -l pwiz
write_example_files.cpp -o write_example_files)
- write_mzid_example_files (g++ -I /usr/include/libpwiz -l pwiz
write_mzid_example_files.cpp -o write_mzid_example_files)
- write_proteome_example_files (g++ -I /usr/include/libpwiz -l pwiz
write_proteome_example_files.cpp -o write_proteome_example_files)
- write_traml_example_files (g++ -I /usr/include/libpwiz -l pwiz
write_traml_example_files.cpp -o write_traml_example_files)
The -I /usr/include/libpwiz specifies the location of the include files for the
whole proteowizard project. The -l pwiz specifies the libpwiz library to be
linked-in so as to build the binaries.
BIBLIOGRAPHICAL REFERENCE TO BE CITED¶
Chambers, M.C., MacLean, B., Burke, R., Amode, D., Ruderman, D.L., Neumann, S.,
Gatto, L., Fischer, B., Pratt, B., Egertson, J., Hoff, K., Kessner, D.,
Tasman, N., Shulman, N., Frewen, B., Baker, T.A., Brusniak, M.-Y., Paulse, C.,
Creasy, D., Flashner, L., Kani, K., Moulding, C., Seymour, S.L., Nuwaysir,
L.M., Lefebvre, B., Kuhlmann, F., Roark, J., Rainer, P., Detlev, S., Hemenway,
T., Huhmer, A., Langridge, J., Connolly, B., Chadick, T., Holly, K., Eckels,
J., Deutsch, E.W., Moritz, R.L., Katz, J.E., Agus, D.B., MacCoss, M., Tabb,
D.L. & Mallick, P. (2012) A cross-platform toolkit for mass spectrometry
and proteomics.
Nature Biotechnology, 30. 10.1038/nbt.2377.
SEE ALSO¶
libpwiz-dev(3),
libpwiz-doc(7),
The library is documented fully in the doxygen-extacted documentation that is
packaged in
libpwiz-doc.
AUTHOR¶
This manual page was written by Filippo Rusconi <lopippo@debian.org>.
Permission is granted to copy, distribute and/or modify this document under
the terms of the GNU General Public License, Version 3, published by the Free
Software Foundation.
On a Debian system the complete text of the GNU General Public License version
3 can be found in the file `
/usr/share/common-licenses/GPL-3'.