NAME¶
Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output
SYNOPSIS¶
use Bio::Tools::Phylo::Phylip::ProtDist;
my $parser = Bio::Tools::Phylo::Phylip::ProtDist->new(-file => 'outfile');
while( my $result = $parser->next_matrix) {
# do something with it
}
DESCRIPTION¶
A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also
Bio::Matrix::IO::phylip this module may go away.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Shawn Hoon¶
Email shawnh@fugu-sg.org
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new¶
Title : new
Usage : my $obj = Bio::Tools::Phylo::Phylip::ProtDist->new();
Function: Builds a new Bio::Tools::Phylo::Phylip::ProtDist object
Returns : Bio::Tools::ProtDist
Args : -fh/-file => $val, # for initing input, see Bio::Root::IO
-program => 'programname' # name of the program
next_matrix¶
Title : next_matrix
Usage : my $matrix = $parser->next_matrix
Function: Get the next result set from parser data
Returns : L<Bio::Matrix::PhylipDist>
Args : none