NAME¶
Bio::Structure::Chain - Bioperl structure Object, describes a chain
SYNOPSIS¶
#add synopsis here
DESCRIPTION¶
This object stores a Bio::Structure::Chain
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to one of the Bioperl
mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Kris Boulez¶
Email kris.boulez@algonomics.com
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new()¶
Title : new()
Usage : $struc = Bio::Structure::Chain->new(
-id => 'human_id',
-accession_number => 'AL000012',
);
Function: Returns a new Bio::Structure::Chain object from basic
constructors. Usually called from Bio::Structure::IO.
Returns : a new Bio::Structure::Chain object
residue()¶
Title : residue
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
add_residue()¶
Title : add_residue
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
model()¶
Title : model
Usage :
Function: nothing useful until I get symbolic references to do what I want
Returns :
Args :
id()¶
Title : id
Usage : $chain->id("chain B")
Function: Gets/sets the ID for this chain
Returns : the ID
Args : the ID
_remove_residues()¶
Title : _remove_residues
Usage :
Function:
Returns :
Args :
_remove_model()¶
Title : _remove_model
Usage :
Function: Removes the Model this Chain is atttached to.
Returns :
Args :
_grandparent()¶
Title : _grandparent
Usage :
Function: get/set a symbolic reference to our grandparent
Returns :
Args :