NAME¶
Bio::Search::Result::hmmer3Result - DESCRIPTION of Object
SYNOPSIS¶
Give standard usage here
DESCRIPTION¶
Describe the object here
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Thomas Sharpton¶
Email thomas.sharpton@gmail.com
Describe contact details here
CONTRIBUTORS¶
Additional contributors names and emails here
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
new¶
Title : new
Usage : my $obj = new Bio::Search::Result::hmmer3Result.pm();
Function: Builds a new Bio::Search::Result::hmmer3Result.pm object
Returns : an instance of Bio::Search::Result::hmmer3Result.pm
Args : -hmm_name => string, name of hmm file
-sequence_file => name of the sequence file
hmm_name¶
Title : hmm_name
Usage : $obj->hmm_name($newval)
Function: Get/Set the value of hmm_name
Returns : value of hmm_name
Args : newvalue (optional)
sequence_file¶
Title : sequence_file
Usage : $obj->sequence_file($newval)
Function: Get/Set the value of sequence_file
Returns : value of sequence_file
Args : newvalue (optional)
next_model¶
Title : next_model
Usage : my $domain = $result->next_model
Function: Returns the next domain - this
is an alias for next_hit
Returns : L<Bio::Search::Hit::HitI> object
Args : none
models¶
Title : models
Usage : my @domains = $result->models;
Function: Returns the list of HMM models seen - this
is an alias for hits()
Returns : Array of L<Bio::Search::Hit::HitI> objects
Args : none
rewind¶
Title : rewind
Usage : $result->rewind;
Function: Allow one to reset the Hit iteration to the beginning
Since this is an in-memory implementation
Returns : none
Args : none