NAME¶
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
SYNOPSIS¶
# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
DESCRIPTION¶
Bio::Search::Hit::HitI objects are data structures that contain information
about specific hits obtained during a library search. Some information will be
algorithm-specific, but others will be generally defined, such as the ability
to obtain alignment objects corresponding to each hit.
SEE ALSO¶
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR - Aaron Mackey¶
Email amackey-at-virginia.edu
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
_initialize¶
Function: where the heavy stuff will happen when new is called
AUTOLOAD¶
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL