NAME¶
Bio::Restriction::IO::itype2 - itype2 enzyme set
SYNOPSIS¶
Do not use this module directly. Use it via the Bio::Restriction::IO class.
DESCRIPTION¶
This is tab delimited, entry per line format which is fast to process.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to the Bioperl mailing
lists Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR¶
Rob Edwards, redwards@utmem.edu
CONTRIBUTORS¶
Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Mark A. Jensen,
maj-at-fortinbras-dot-us
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
read¶
Title : read
Usage : $renzs = $stream->read
Function: reads all the restrction enzymes from the stream
Returns : a Bio::Restriction::IO object
Args : none
Internally creates a hash of enzyme information which is passed on to
Bio::Restriction::Enzyme::new.
_xln_sub¶
Title : _xln_sub
Function: Translates withrefm coords to Bio::Restriction coords
Args : Bio::Restriction::Enzyme object, scalar integer (cut posn)
Note : Used internally; pass as a coderef to the B:R::Enzyme
constructor
write¶
Title : write
Usage : $stream->write($renzs)
Function: writes restriction enzymes into the stream
Returns : 1 for success and 0 for error
Args : a Bio::Restriction::Enzyme
or a Bio::Restriction::EnzymeCollection object