NAME¶
- hmm2index - create a binary SSI index for an HMM database
-
SYNOPSIS¶
hmm2index [options] database
DESCRIPTION¶
hmm2index is a utility that creates a binary SSI ("squid sequence
index" format) index for an HMM database file called
database. The
new index file is named
database.ssi. An SSI index file is required for
hmm2fetch to work, and also for the PVM implementation of
hmm2pfam.
OPTIONS¶
- -h
- Print brief help; includes version number and summary of all options,
including expert options.
SEE ALSO¶
Master man page, with full list of and guide to the individual man pages: see
hmmer2(1).
For complete documentation, see the user guide
(
ftp://selab.janelia.org/pub/software/hmmer/2.3.2/Userguide.pdf); or see the
HMMER web page,
http://hmmer.janelia.org/.
COPYRIGHT¶
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
Freely distributed under the GNU General Public License (GPL).
See the file COPYING in your distribution for details on redistribution
conditions.
AUTHOR¶
Sean Eddy
HHMI/Dept. of Genetics
Washington Univ. School of Medicine
4566 Scott Ave.
St Louis, MO 63110 USA
http://www.genetics.wustl.edu/eddy/