NAME¶
atlasquery - commandline tool to query brain atlases about stereotaxic
coordinates
SYNOPSIS¶
atlasquery -a
"<atlasname>" [
-m
<maskimage>] [
-c <X>,<Y>,<Z>]
DESCRIPTION¶
atlasquery provides information about stereotaxic brain coordinates by
querying brain atlases. FSL provides nine different atlases that can be used
with atlasquery. Please note that these atlases are covered by a
non-commercial licenses and are not part of Debian.
However, as the format of the atlases is documented in the HTML documentation of
FSLView it is easy the produce new atlases (at least technically).
The
-a option which selects the to be queried atlas is compulsory.
Atlases should be put into
/usr/share/fsl/data/atlases. By setting the
environment variable
FSLATLASPATH to a different path one can customize
this location.
Please see /usr/share/doc/fslview/README.Debian for more information.
OPTIONS¶
- -V, --verbose
- Switch on diagnostic messages.
- -h, --help
- Display a short usage description.
- -m, --mask
- A mask image to use during structural lookups.
- -c, --dumpatlases
- Print a list of the available atlases.
BUGREPORTS¶
If you discover an bugs please report them either to the FSL mailing list or to
fslview-bugs@fmrib.ox.ac.uk.
AUTHOR¶
atlasqeury was written by Dave Flitney.
This manual page was written by Michael Hanke <michael.hanke@gmail.com>,
for the Debian project (but may be used by others).
SEE ALSO¶
fslview(1), fsl(1)
- FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview
- FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/