NAME¶
fastq_quality_filter - Filters sequences based on quality
DESCRIPTION¶
usage: fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o
OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
- [-h]
- = This helpful help screen.
- [-q N]
- = Minimum quality score to keep.
- [-p N]
- = Minimum percent of bases that must have [-q] quality.
- [-z]
- = Compress output with GZIP.
- [-i INFILE]
- = FASTA/Q input file. default is STDIN.
- [-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-v] = Verbose -
report number of sequences.
- If [-o] is specified,
- report will be printed to STDOUT.
- If [-o] is not specified (and output goes to STDOUT), report will be
printed to STDERR.
SEE ALSO¶
The quality of this automatically generated manpage might be insufficient. It is
suggested to visit
- http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
