PEPNET(1e) | EMBOSS Manual for Debian | PEPNET(1e) |
NAME¶
pepnet - Draw a helical net for a protein sequenceSYNOPSIS¶
pepnet -sequence sequence
-amphipathic toggle
-squares string
-diamonds string
-octags string
-graph graph
pepnet -help
DESCRIPTION¶
pepnet is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Display,Protein:2D Structure" command group(s).OPTIONS¶
Input section¶
-sequence sequenceOutput section¶
-amphipathic toggleIf this is true then the residues ACFGILMVWY are marked
as squares and all other residues are unmarked. This overrides any other
markup that you may have specified using the qualifiers '-squares',
'-diamonds' and '-octags'.
-squares string
By default the aliphatic residues ILVM are marked with
squares. Default value: ILVM
-diamonds string
By default the residues DENQST are marked with diamonds.
Default value: DENQST
-octags string
By default the positively charged residues HKR are marked
with octagons. Default value: HKR
-graph graph
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
pepnet is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |