NAME¶
stream_pixels - Stream pixel data from one or more images to Standard Output.
SYNOPSIS¶
stream_pixels ImagePaths
DESCRIPTION¶
This tool reads one or more images and writes all their pixels to standard
output in binary form. Optionally, each image can be reoriented to a specified
anatomical orientation and/or converted to a different data type. This is
useful for piping image data through a pipeline, e.g., the Camino DTI toolkit.
OPTIONS¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
Main Options¶
- --reorient <string>
- Reorient all images to anatomy-based standard orientation, e.g., RAS or
LPS for axial. Default: no reorientation. [Default: NONE]
- --change-endian
- Change endianness. Default: native endianness.
- --convert
- Convert data to new scalar type. Default: no conversion. Supported values:
"char", "byte", "short", "ushort",
"int", "uint", "float", "double",
or use one of the following:
- --char
- 8 bits, signed integer
- --byte
- 8 bits, unsigned integer
- --short
- 16 bits, signed integer
- --ushort
- 16 bits, unsigned integer
- --int
- 32 bits, signed integer
- --uint
- 32 bits, unsigned integer
- --float
- 32-bits, single-precision floating point
- --double
- 64 bits, double-precision floating point
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant
EB008381.