NAME¶
lmsba - Local voting.
SYNOPSIS¶
lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2
atlasLabels2 [...]]
DESCRIPTION¶
This tool combines multiple multi-class segmentations from co-registered and
reformatted atlases using locally-weighted Shape-Based Averaging.
OPTIONS¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --set-padding-value <double>
- Set padding value for input intensity images. Pixels with this value will
be ignored. [Default: disabled]
Label Combination Options¶
- --patch-radius <none>
- Radius of image patch (in pixels) used for local similarity computation.
[Default: 5]
- --search-radius <none>
- Search radius for local image patch matching. The algorithm finds the
best-matching patch within this radius by exhaustive search. [Default:
0]
- --no-local-outliers
- Detect and exclude local outliers in the Shape Based Averaging
procedure.
- --no-global-outliers
- Detect and exclude global outliers by removing poorly correlated atlases
prior to local SBA procedure.
Output Options¶
- --output <string>, -o
<string>
- File system path for the output image. [Default: lsbo.nii ]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National
Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data
Integration Component. From April 2009 through September 2011, CMTK
development and maintenance was supported by the NIBIB under Grant
EB008381.