NAME¶
makemat - convert binary profiles into portable ASCII form
SYNOPSIS¶
makemat [
-] [
-E N] [
-G N] [
-H] [
-P filename] [
-S X] [
-U str] [
-d str] [
-z N]
DESCRIPTION¶
makemat converts a collection of binary profiles, created by the
-C option of PSI-BLAST, into portable ASCII form.
OPTIONS¶
A summary of options is included below.
- -
- Print usage message
- -E N
- Cost to extend a gap (default = 1)
- -G N
- Cost to open a gap (default = 11)
- -H
- Print help; overrides all other arguments
- -P filename
- Database name for profile database (default = stdin)
- -S X
- Scaling factor for matrix outputs to avoid round-off problems (default =
100)
- -U str
- Underlying Matrix (default = BLOSUM62)
- -d str
- Underlying sequence database used to make profiles (default =
nr)
- -z N
- Effective length of the profile database (0 for length of -d
option)
AUTHOR¶
The National Center for Biotechnology Information.
SEE ALSO¶
blast(1),
copymat(1), /usr/share/doc/blast2/impala.html