BP_COMPOSITE_LD(1p) | User Contributed Perl Documentation | BP_COMPOSITE_LD(1p) |
NAME¶
bp_composite_LD -i filename.prettybase.txt --sortbyld > outfileSYNOPSIS¶
bp_composite_LD -i filename.prettybase [-o out.LD] [-f prettybase/csv] [--sortbyld] [--noconvertindels]
DESCRIPTION¶
This a script which allows an easy way to calculate composite LD.OPTIONS¶
-i or --in filename -f or --format genotype format (prettybase or CSV) --sortbyld To see data sorted by LD instead of just all thesite1/site2 pair LD values. -o or --out output filename, otherwise will print to STDOUT --noconvert (applicable for prettybase format file only)
if specified will NOT attempt to convert indel
states to 'I' and delete states ('-') to 'D'. -h or --help see this documentation
AUTHOR Jason Stajich, Matthew Hahn¶
For more information contact: Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>2014-07-13 | perl v5.18.2 |