NAME¶

CreateTiledMosaic - part of ANTS registration suite

DESCRIPTION¶

COMMAND:¶

CreateTiledMosaic

Render a 3-D image volume with optional Rgb overlay.

OPTIONS:¶

Main input is a 3-D grayscale image.

An optional Rgb image can be added as an overlay. It must have the same image geometry as the input grayscale image.

Specifies the ROI of the RGB voxels used.

If an Rgb image is provided, render the overlay using the specified alpha parameter.

The output consists of the tiled mosaic image.

The tile geometry specifies the number of rows and columns in the output image. For example, if the user specifies '5x10', then 5 rows by 10 columns of slices are rendered. If R < 0 and C > 0 (or vice versa), the negative value is selected based on direction.

Specifies the direction of the slices. If no direction is specified, the direction with the coarsest spacing is chosen.

-p, --pad-or-crop padVoxelWidth

[padVoxelWidth,<constantValue=0>] [lowerPadding[0]xlowerPadding[1],upperPadding[0]xupperPadding[1],constantValue]

The user can specify whether to pad or crop a specified voxel-width boundary of each individual slice. For this program, cropping is simply padding with negative voxel-widths. If one pads (+), the user can also specify a constant pad value (default = 0). If a mask is specified, the user can use the mask to define the region, by using the keyword "mask" plus an offset, e.g. "-p mask+3".

numberOfSlicesToIncrement [numberOfSlicesToIncrement,<minSlice=0>,<maxSlice=lastSlice>]

This option gives the user more control over what slices to use for rendering. The user can specify specific slices for a particular order. Alternatively the user can specify the number slices to increment with the optional specification of which slices to start and end the sequence. A negative value for the numberOfSlicesToIncrement causes rendering in the reverse order. For the third option, minSlice < maxSlice. If a mask is specified, the user can use the mask to define the region, by using the keyword "mask" plus an offset, e.g. "-s [1,mask-3,200]".For the third option, minSlice < maxSlice.

Flip individual slice images horizontally and/or vertically, specified e.g. as '0x1' or '1x1'.

Permute (or swap) the axes of the individual slice images.

Print the help menu (short version).

Print the help menu. <VALUES>: 1