table of contents
other versions
- jessie-backports 3.8.0+dfsg-1~bpo8+1
- stretch 3.8.0+dfsg-1
- testing 3.12.0+dfsg-2
- stretch-backports 3.12.0+dfsg-2~bpo9+1
- unstable 3.12.0+dfsg-2
Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm) | User Contributed Perl Documentation | Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm) |
NAME¶
Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header with locations of where genes are in the multifasta alignment of core genesVERSION¶
version 3.8.0SYNOPSIS¶
Create an embl file for the header with locations of where genes are in the multifasta alignment of core genesuse Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;
my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new( output_filename => 'core_alignment_header.embl', multifasta_files => [ 't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln', 't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln' ], gene_lengths => { 't/data/multifasta_files/1.aln' => 1, 't/data/multifasta_files/outof_order.aln' => 10, 't/data/multifasta_files/2.aln' => 100, 't/data/multifasta_files/3.aln' => 1000 }, ); $obj->create_file;
AUTHOR¶
Andrew J. Page <ap13@sanger.ac.uk>COPYRIGHT AND LICENSE¶
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under:The GNU General Public License, Version 3, June 2007
2017-08-10 | perl v5.20.2 |