NAME¶
chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow
feeding of multiple chromosomes to programs like murasaki
SYNOPSIS¶
chromostitch.pl [options] <stitch file> <chromosome1 chromosome2 ...
>
- Options:
- --sort sorts everything
- --output=<file> altnerate way of specifying an output file
PARAMETERS¶
- stitch file output file (overwrites)
- chromosome1 chromosome2 ... List of chromosome input files
- B--output=<file> Alternate way of specifying an output file
- B--sort Always sort EVERYTHING. (Allows for nicely sorted lists from
sloppy input of filenames from like multiple directories of *.gbk or
something)
DESCRIPTION¶
Makes stitch files for feeding to geneparse.pl to allow feeding of multiple
chromosomes to programs like murasaki