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GT-STAT(1) GenomeTools Manual GT-STAT(1)

NAME

gt-stat - Show statistics about features contained in GFF3 files.

SYNOPSIS

gt stat [option ...] [GFF3_file ...]

DESCRIPTION

-genelengthdistri [yes|no]
show gene length distribution (default: no)
-genescoredistri [yes|no]
show gene score distribution (default: no)
-exonlengthdistri [yes|no]
show exon length distribution (default: no)
-exonnumberdistri [yes|no]
show exon number distribution (default: no)
-intronlengthdistri [yes|no]
show intron length distribution (default: no)
-cdslengthdistri [yes|no]
show CDS length distribution (measured in amino acids) (default: no)
-source [yes|no]
show the set of used source tags (column 2 in regular GFF3 lines) (default: no)
-addintrons [yes|no]
add intron features between existing exon features (before computing stats) (default: no)
-v [yes|no]
be verbose (default: no)
-o [filename]
redirect output to specified file (default: undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9