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GT-SEQORDER(1) GenomeTools Manual GT-SEQORDER(1)

NAME

gt-seqorder - Output sequences as MultiFasta in specified order.

SYNOPSIS

gt seqorder (-invert|-sort|-revsort|-shuffle|-sorthdr|-sorthdrnum) encseq

DESCRIPTION

-invert [yes|no]
invert order of sequences (default: no)
-sort [yes|no]
sort sequences lexicographically (by actual sequence) (default: no)
-revsort [yes|no]
sort sequences in reverse lexicographic order (default: no)
-sorthdr [yes|no]
sort sequences lexicographically by sequence header (default: no)
-sorthdrnum [yes|no]
sort sequences numerically by sequence header (default: no)
-shuffle [yes|no]
shuffle sequences pseudo-randomly (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9