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GT-MATSTAT(1) GenomeTools Manual GT-MATSTAT(1)

NAME

gt-matstat - Compute matching statistics.

SYNOPSIS

gt matstat [options ...] -query queryfile [...]

DESCRIPTION

-fmi [string]
specify fmindex (default: undefined)
-esa [string]
specify suffix array (default: undefined)
-pck [string]
specify packed index (default: undefined)
-query
specify queryfiles
-min [value]
only output length if >= given minimum length (default: 0)
-max [value]
only output length if ⇐ given maximum length (default: 0)
-output
set output flags (sequence, querypos, subjectpos)
-help
display help and exit
-version
display version information and exit

ADDITIONAL INFORMATION

For detailed information, please refer to the manual of matstat.

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.
07/29/2016 GenomeTools 1.5.9