NAME¶

asn2gb - convert ASN.1 biological data to a GenBank-style flat format

SYNOPSIS¶

asn2gb [-] [-A accession] [-F] [-a asn-type] [-b] [-c] [-d] [-f format] [-g N] [-h N] [-i filename] [-j N] [-k N] [-l filename] [-m mode] [-n filename] [-o filename] [-p] [-q filename] [-r] [-s style] [-t N] [-u N] [-y N]

DESCRIPTION¶

asn2gb converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats, and is the successor to asn2ff(1).

OPTIONS¶

A summary of options is included below.

-

Print usage message

-A accession

Accession to fetch; may take the form accession,complexity,flags where complexity should normally be 0 and a flags value of -1 enables fetching of external features (as with the legacy -F option)

-F

Fetch remote annotations (equivalent to specifying -A accession,0,-1)

-a asn-type

ASN.1 Type:

-b

Input file is binary

-c

Batch file is compressed

-d

Seq-loc minus strand

-f format

Format:

-g N

Bit flags (all default to off):

-h N

Lock/Lookup Flags (all default to off):

-i filename

Input file name (default = stdin)

-j N

Start location (default is 0, beginning of sequence)

-k N

End location (default is 0, end of sequence)

-l filename

Log file

-m mode

Mode:

-n filename

Asn2Flat Executable (default = asn2flat)

-o filename

Output file name (default = stdout)

-p

Propagate top descriptors

-q filename

Ffdiff Executable (default = /netopt/genbank/subtool/bin/ffdiff)

-r

Enable remote fetching

-s style

Style:

-t N

Batch:

-y N

Feature itemID

AUTHOR¶

The National Center for Biotechnology Information.

SEE ALSO¶

asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2xml(1), asndhuff(1), insdseqget(1), /usr/share/doc/libncbi6-dev/asn2gb.txt.gz.