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CNVKIT_BREAKS(1) User Commands CNVKIT_BREAKS(1)

NAME

cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.

DESCRIPTION

usage: cnvkit.py breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment

positional arguments:

Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command.
Segmentation calls (.cns), the output of the 'segment' command).

options:

show this help message and exit
Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1]
Output table file name.
July 2023 cnvkit.py breaks 0.9.10