table of contents
BAM-READ(1) | User Commands | BAM-READ(1) |
NAME¶
bam-read - Parse bam files after multi-mapping reads have been assigned and aggregate read mapping information by contig.SYNOPSIS¶
Currently captured:- name - bases mapped - edit distance - bridges - length - reads mapped - both mapped - proper pair - good - uncovered bases - mean mapq - probability of coverage not being segmented
DESCRIPTION¶
bam-read version 1.0.0 Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>example: bam-read in.bam out.csv 0.95
Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>
example: bam-read in.bam out.csv 0.95
July 2018 | bam-read version 1.0.0 |