optional arguments:¶
- -h, --help
- show this help message and exit
- --out OUT
- The path to the output file
- --types TYPES
- The types of variants to include in the output. NOTE: This works if
TYPE=XX can be found in the INFO column of the vcf file. The special
keyword ALL includes all types. This is the default setting. Common types
are snp, mnp, ins, del and complex. Give as comma-separated list. Example:
--types snp,ins,del
- --version
- show program's version number and exit
- --force
- Force overwriting of output file. (If it already exists)
by Ola Brynildsrud (olbb@fhi.no)