NAME¶
Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds,
removing full clusters each time
SYNOPSIS¶
Run CDhit iteratively with reducing thresholds, removing full clusters each time
use Bio::Roary::IterativeCdhit;
my $obj = Bio::Roary::IterativeCdhit->new(
output_cd_hit_filename => 'output_cd_hit_filename.fa',
output_combined_filename => 'output_combined_filename.fa',
number_of_input_files => 5,
output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
);
$obj->run;
AUTHOR¶
Andrew J. Page <ap13@sanger.ac.uk>
COPYRIGHT AND LICENSE¶
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007