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gfapy-mergelinear(1) gfapy-mergelinear(1)

NAME

gfapy-mergelinear - Merge linear paths in a GFA graph

SYNOPSIS

gfapy-mergelinear [-h] [--redundant] [--no-progress] [--quiet]
                       [--vlevel VLEVEL] [--version]
                       filename

DESCRIPTION

Merges linear paths in a GFA file.

OPTIONS

-h, --help
show help message and exit
--redundant, -r
create redundant paths, similar to the contigs constructed by Readjoiner
--no-progress, -p
do not show progress log
--quiet, -q
suppress output
--vlevel VLEVEL
set validation level to LEVEL
--version
show program's version number and exit
24 September 2018 gfapy 1.0.0+dfsg