NAME¶
Algorithm::HMM::Report - Report object for the Algorithm::HMM package.
DESCRIPTION¶
The Algorithm::HMM::Report object is returned by the Algorithm::HMM search
method. It contains the sets of global and domain hits returned by the model.
SYNOPSIS¶
# Search the HMM model. An Algorithm::HMM::Report object is returned.
my $rep = $hmm->search("AAIELKBPOWELKQJPASDLKJIGE");
# Get all the global hits from the report object.
my @ghits = $rep->global_hits();
# Get all the domain hits from the report object.
my @dhits = $rep->domain_hits();
METHODS¶
my @ghits = $rep->global_hits();
my @dhits = $rep->domain_hits();
The global_hits() and domain_hits() methods return
lists of Algorithm::HMM::Hit::Global and Algorithm::HMM::Hit::Domain objects
respectively. A global hit is a match across the entire model, while a
domain hit is a match on a smaller subsequence of the model.
AUTHOR¶
The Algorithm::HMM package was originally written by Cory Spencer
<cspencer@sfu.ca> of the Simon Fraser University Brinkman Laboratory. It
is currently maintained by Matthew Laird <matt@brinkman.mbb.sfu.ca>.
SEE ALSO¶
Algorithm::HMM, Algorithm::HMM::Hit::Global, Algorithm::HMM::Hit::Domain