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mia-2dtrackpixelmovement(1) General Commands Manual mia-2dtrackpixelmovement(1)

NAME

('mia\-2dtrackpixelmovement',) - Track positions in 2D

SYNOPSIS

mia-2dtrackpixelmovement -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

mia-2dtrackpixelmovement Track the position of a pixel by means of a transformation obtained by using image registration. The pixel data is given in CSV format id;time;x;y;z;reserved

The fields 'time', 'x', 'y', and 'z' are updated, and the fields 'id' and 'reserved' are preserved, empty lines are ignored.

OPTIONS

File-IO

-i --in-file=(input, required); string
input point set

-o --out-file=(output, required); string
output point set

-t --transformation=(input, required); io
transformation describing the monitored change For supported file types see PLUGINS:2dtransform/io

Parameters

-T --time-step=1
time step to use for the position update

Help & Info

-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors
--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing

--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 2dtransform/io

bbs
Binary (non-portable) serialized IO of 2D transformations

('Recognized file extensions: ', '.bbs')

datapool
Virtual IO to and from the internal data pool

('Recognized file extensions: ', '.@')

vista
Vista storage of 2D transformations

('Recognized file extensions: ', '.v2dt')

xml
XML serialized IO of 2D transformations

('Recognized file extensions: ', '.x2dt')

EXAMPLE

This program evaluated the changed position of pixels given in input.csv, by using a time step of 2.0 time units and the transformation change.v2df, and writes the updated positions to updated.csv.

mia-2dtrackpixelmovement -i input.csv -o output.cvs --time-step 2.0 --transformation change.v2df

AUTHOR(s)

Gert Wollny

COPYRIGHT

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.
v2.4.6 USER COMMANDS