KMC_TOOLS-COUNTERS_SUBTRACT(1) | KMC_TOOLS-COUNTERS_SUBTRACT(1) |
NAME¶
kmc_tools-counters_subtract - calculate counters subtraction of two KMC databasesSYNOPSIS¶
kmc_tools counters_subtract <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>DESCRIPTION¶
The output database will contain only k-mers that are present in the first input set and have counters higher than the appropriate k-mers in the second set. For each k-mer the counter is equal to the difference between the counter in the first set and the counter in the second set.OPTIONS¶
For each input there are additional parameters:-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
For output there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value>
times
-cx<value>
exclude k-mers occurring more of than <value>
times
-cs<value>
maximal value of a counter
EXAMPLE¶
kmc - k28 file1.fastq kmers1 tmp kmc - k28 file2.fastq kmers2 tmp kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract
AUTHOR¶
KMC was originally written by:•Sebastian Deorowicz (
<sebastian.deorowicz@polsl.pl>)
•Marek Kokot
•Szymon Grabowski
•Agnieszka Debudaj-Grabysz