|Bio::DB::GFF::Aggregator::reftranscript(3pm)||User Contributed Perl Documentation||Bio::DB::GFF::Aggregator::reftranscript(3pm)|
NAME¶Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts
DESCRIPTION¶Bio::DB::GFF::Aggregator::retranscript was written to make the compound feature, "reftranscript" for use with Gbrowse editing software developed outside of the GMOD development group. It can be used to aggregate "reftranscripts" from "refexons", loaded as second copy features. These features, in contrast to "transcripts", are usually implemented as features which cannot be edited and serve as starting point references for annotations added using Gbrowse for feature visualization.
Adding features to the compound feature, "reftranscript", can be done by adding to the "part_names" call (i.e. "refCDS").
Title : method Usage : $aggregator->method Function: return the method for the composite object Returns : the string "reftranscript" Args : none Status : Public
Title : part_names Usage : $aggregator->part_names Function: return the methods for the sub-parts Returns : the list "refexon" Args : none Status : Public
Title : main_name Usage : $aggregator->main_name Function: return the method for the main component Returns : the string "reftranscript" Args : none Status : Public
SEE ALSO¶Bio::DB::GFF, Bio::DB::GFF::Aggregator
AUTHOR¶Paul Rudnick <firstname.lastname@example.org>.
Copyright (c) 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.