EXTRACTSEQ(1e) | EMBOSS Manual for Debian | EXTRACTSEQ(1e) |
NAME¶
extractseq - Extract regions from a sequenceSYNOPSIS¶
extractseq -sequence sequence -regions range [-separate boolean] -outseq seqoutall
extractseq -help
DESCRIPTION¶
extractseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).OPTIONS¶
Input section¶
-sequence sequenceRequired section¶
-regions rangeRegions to extract. A set of regions is specified by a
set of pairs of positions. The positions are integers. They are separated by
any non-digit, non-alpha character. Examples of region specifications are:
24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99 Default value:
$(sequence.begin)-$(sequence.end)
Additional section¶
-separate booleanIf this is set true then each specified region is written
out as a separate sequence. The name of the sequence is created from the name
of the original sequence with the start and end positions of the range
appended with underscore characters between them, eg: XYZ region 2 to 34 is
written as: XYZ_2_34 Default value: N
Output section¶
-outseq seqoutallBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
extractseq is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |