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CNVKIT_BREAKS(1) |
User Commands |
CNVKIT_BREAKS(1) |
NAME¶
cnvkit_breaks - List the targeted genes in which a copy number breakpoint
occurs.
DESCRIPTION¶
usage: cnvkit breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment
positional arguments:¶
- filename
- Processed sample coverage data file (*.cnr), the output of the 'fix'
sub-command.
- segment
- Segmentation calls (.cns), the output of the 'segment' command).
optional arguments:¶
- -h, --help
- show this help message and exit
- -m MIN_PROBES, --min-probes MIN_PROBES
- Minimum number of within-gene probes on both sides of a breakpoint to
report it. [Default: 1]
- -o FILENAME, --output FILENAME
- Output table file name.