NAME¶
alignment-max - Construct a posterior decoding alignment to summarize an
alignment sample.
SYNOPSIS¶
alignment-max [OPTIONS] < alignments-file
DESCRIPTION¶
Construct a posterior decoding alignment to summarize an alignment sample.
ALLOWED OPTIONS:¶
- -h, --help
- Produce help message
- --alphabet arg
- Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets,
Codons, or Codons+stop.
- -s arg (=0), --skip arg (=0)
- Number of alignment samples to skip
- -m arg (=1000), --max-alignments arg
(=1000)
- Maximum number of alignments to analyze
- --analysis arg (=wsum)
- sum, wsum, multiply
- -o arg (=-), --out arg (=-)
- Output file (defaults to stdout)
- -p arg, --out-probabilities arg
- Output file for column probabilities, if specified
- -v, --verbose
- Output more log messages on stderr.
AUTHORS¶
Benjamin Redelings.