other versions
- buster 1.6.3+dfsg-1
- buster-backports 2.0.0+dfsg-1~bpo10+1
- testing 2.0.1+dfsg-1
- unstable 2.0.1+dfsg-1
| PROPMAPPED(1) | User Commands | PROPMAPPED(1) |
NAME¶
propmapped - calculate the proportion of mapped reads/fragmentsUSAGE¶
prommapped [options] -i <file>Required arguments:
- -i <string>
- An input file containing read mapping results. Both SAM or BAM formats are supported.
Optional arguments:
- -o <string>
- Name of output file including mapping statistics.
- -f
- If specified, fragments (read pairs) will be counted instead of individual reads. This option is only applicable for paired-end reads.
- -p
- If specified, only properly paired reads will be counted. This option is only applicable for paired-end reads.
propMapped v2.0.0
- Calculate the proportion of mapped reads/fragments.
| February 2020 | propmapped 2.0.0+dfsg-1~bpo10+1 |