SUBINDEL(1) | User Commands | SUBINDEL(1) |
NAME¶
subindel - detect short and long indels
USAGE¶
subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max indel length>} {--paired-end}
Example:¶
- subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end
SubIndel: detect short and long indels
Usage:¶
- subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max indel length>} {--paired-end}
Example:¶
- subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end
May 2020 | subindel 2.0.1+dfsg |