table of contents
SAMBAMBA(1) | SAMBAMBA(1) |
NAME¶
sambamba - toolkit for working with SAM/BAM files
SYNOPSIS¶
sambamba [subcommand] [arguments...]
DESCRIPTION¶
sambamba unifies several independent tools in one executable:
- sambamba-view(1)
- sambamba-index(1)
- sambamba-merge(1)
- sambamba-sort(1)
- sambamba-markdup(1)
- sambamba-flagstat(1)
- sambamba-slice(1)
- sambamba-pileup(1)
Thus available subcommands are view, index, merge, sort, markdup, flagstat, slice, and mpileup. Their use is explained on the corresponding man pages.
Note that sambamba uses all available cores by default.
February 2015-2020 |