Scroll to navigation

FILTERSEQ.PY(1) User Commands FILTERSEQ.PY(1)

NAME

FilterSeq.py - Filters sequences in FASTA/FASTQ files

DESCRIPTION

usage: FilterSeq.py [--version] [-h] ...

Filters sequences in FASTA/FASTQ files

help:

show program's version number and exit
show this help message and exit

subcommands:

Filtering operation
Filters reads by length.
Filters reads by N or gap character count.
Filters reads by consecutive nucleotide repeats.
Filters reads by quality score.
Masks low quality positions.
Trims sequences by quality score decay.

output files:

<command>-pass
reads passing filtering operation and modified accordingly, where <command> is the name of the filtering operation that was run.
<command>-fail
raw reads failing filtering criteria, where <command> is the name of the filtering operation.

output annotation fields:

None

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

May 2020 FilterSeq.py 0.6.0