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ALIGNSETS.PY(1) User Commands ALIGNSETS.PY(1)

NAME

AlignSets.py - Multiple aligns input sequences by group

DESCRIPTION

usage: AlignSets.py [--version] [-h] ...

Multiple aligns input sequences by group

help:

show program's version number and exit
show this help message and exit

subcommands:

Alignment method
Align sequence sets using muscle.
Align sequence sets using predefined 5' offset.
Create a 5' offset table by primer multiple alignment.

output files:

align-pass
multiple aligned reads.
align-fail
raw reads failing multiple alignment.
offsets-forward
5' offset table for input into offset subcommand.
offsets-reverse
3' offset table for input into offset subcommand.

output annotation fields:

None

AUTHOR


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

May 2020 AlignSets.py 0.6.0