table of contents
PHIPACK-PROFILE(1) | User Commands | PHIPACK-PROFILE(1) |
NAME¶
phipack-profile - PHI test and other tests of recombination
SYNOPSIS¶
Phi [-f|-s|-r] Filename [-t] AlignmentType
DESCRIPTION¶
Input file not specified!!! (use -f|-r|-s)
- [-w #] [-k #] [- v] [-n #] [-m #]
OPTIONS¶
-f: Filename = FASTA format
-s: Filename = Strict phylip file
-r: Filename = Relaxed phylip file
- -t: AlignmentType = D|A|O where D=DNA
- A=AA and O=OTHER [default DNA]
-w: # = Change default window size for PHI [default w = 100]
-v: Verbose [default = FALSE]
-n: # = Change scanning size for regions to test [default n = 1000]
-m: # = Step size for profile method [default m = 25]
August 2020 | phipack-profile 0.0.20160614 |