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SWISS::CCs(3pm) User Contributed Perl Documentation SWISS::CCs(3pm)

Name

SWISS::CCs

Description

SWISS::CCs represents the CC lines within a Swiss-Prot or TrEMBL entry as specified in the user manual
http://www.expasy.org/sprot/userman.html . The CCs object is a container object which holds a list comprised of object of the type SWISS::CC or derived classes (see below).

Code example

local $/="\n//\n";

while (<>) {

  my $entry = SWISS::Entry-> fromText($_);
  my @CCs = $entry -> CCs -> elements();
 
  for my $CC (@CCs) {
     
    if ($CC -> topic eq 'ALTERNATIVE PRODUCTS') {
    
      # now can call methods of CCalt_prod 
    
    } elsif ($CC -> topic eq 'Copyright') {
    
      # now can call methods of CCcopyright
    
    } else {
    
      # now can call methods of CC
    }
  }
}

Inherits from

SWISS::ListBase.pm

Attributes

"list"
Each list element is an object of one of the following classes, depending of the type of comment: 

 topic                           object
 --------------------            --------------------
 ALTERNATIVE PRODUCTS            SWISS::CCalt_prod
 RNA EDITING                     SWISS::CCrna_editing
 BIOPHYSICOCHEMICAL PROPERTIES   SWISS::CCbpc_properties
 INTERACTION                     SWISS::CCinteraction
 COFACTOR                        SWISS::CCcofactor
 DISEASE                         SWISS::CCdisease
 SEQUENCE CAUTION                SWISS::CCseq_caution
 SUBCELLULAR LOCATION            SWISS::CCsubcell_location
 Copyright                       SWISS::CCcopyright
 (all other topics)              SWISS::CC

Methods

Standard methods

Sort the CC block according to the order given in Swiss-Prot annotation note ANN017.

Reading/Writing methods

Returns true if entry contains a comment block with the specified topic.
Returns a string representation of the copyright text.
Deletes all comment elements whose topic matches the first element of the pattern list. The second element is the used to specify a requirement for the comment to match as well.
An array is returned consisting of all comment elements elements whose topic matches any elements of the pattern list.
Same as get, but returns the results wrapped in a new ListBase object.
Returns a string representation of the CCs object.
2020-12-25 perl v5.32.0