table of contents
| CNVKIT_SEX(1) | User Commands | CNVKIT_SEX(1) |
NAME¶
cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and Y.
DESCRIPTION¶
usage: cnvkit sex [-h] [-y] [-o FILENAME] filenames [filenames ...]
positional arguments:¶
- filenames
- Copy number or copy ratio files (*.cnn, *.cnr).
optional arguments:¶
- -h, --help
- show this help message and exit
- -y, --male-reference, --haploid-x-reference
- Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have -1 chrX).
- -o FILENAME, --output FILENAME
- Output table file name.
| January 2021 | cnvkit sex 0.9.8 |