table of contents
| CNVKIT_IMPORT-PICARD(1) | User Commands | CNVKIT_IMPORT-PICARD(1) |
NAME¶
cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.
The input file is generated by the PER_TARGET_COVERAGE option in the
CalculateHsMetrics script in Picard tools.
If 'antitarget' is in the input filename, the generated output filename will
have the suffix '.antitargetcoverage.cnn', otherwise
'.targetcoverage.cnn'.
DESCRIPTION¶
usage: cnvkit import-picard [-h] [-d DIRECTORY] targets [targets ...]
positional arguments:¶
- targets
- Sample coverage .csv files (target and antitarget).
optional arguments:¶
- -h, --help
- show this help message and exit
- -d DIRECTORY, --output-dir DIRECTORY
- Output directory name.
| January 2021 | cnvkit import-picard 0.9.8 |