|BP_RUN_NEIGHBOR(1p)||User Contributed Perl Documentation||BP_RUN_NEIGHBOR(1p)|
run_neighbor - run Phylip's 'neighbor' program through Bioperl
run_neighbor [-i inputfile] [-o outfilename]
Provide an matrix file to run neighbor on. File should be named of the forma file.matrix or file.protdist (the ending doesn't matter, but the program expects a file in the form of (\S+)\.(\S+).
This will run the application 'neighbor' to build a Neighbor-Joining tree from a protein distance matrix.
Jason Stajich, jason-AT-open-bio-DOT-org