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CNVKIT_SEX(1) User Commands CNVKIT_SEX(1)


cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and Y.


usage: cnvkit sex [-h] [-y] [-o FILENAME] filenames [filenames ...]

positional arguments:

Copy number or copy ratio files (*.cnn, *.cnr).


show this help message and exit
Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have -1 chrX).
Output table file name.
September 2022 cnvkit sex 0.9.9