table of contents
other versions
- stretch 2.3.1+dfsg-4
- testing 2.4.0+dfsg-11
- stretch-backports 2.4.0+dfsg-11~bpo9+1
- unstable 2.4.0+dfsg-11
MASON_GENOME(1) | User Commands | MASON_GENOME(1) |
NAMEΒΆ
mason_genome - Random Genome SimulationSYNOPSIS
- mason_genome [OPTIONS] [-l LEN]+ -o OUT.fa
DESCRIPTION
- Simulate a random genome to the output file. For each -l/--contig-length entry, a contig with the given length will be simulated.
OPTIONS
-h, --help
- Display the help message.
--version-check BOOL
- Turn this option off to disable version update notifications of the application. One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.
--version
- Display version information.
-q, --quiet
- Set verbosity to a minimum.
-v, --verbose
- Enable verbose output.
-vv, --very-verbose
- Enable very verbose output.
- Simulation Configuration:
-l, --contig-length List of INTEGER's
- Length of the contig to simulate. Give one -l value for each contig to simulate. In range [1..inf].
-s, --seed INTEGER
- The seed to use for the random number generator. Default: 0.
- Output Options:
-o, --out-file OUTPUT_FILE
- Output file. Valid filetypes are: .fasta and .fa.
EXAMPLES
- mason_genome -l 1000 -l 4000 -o genome.fa
- Simulate a genome with two contigs of lengths 1000 and 4000 and write it to genome.fa.
VERSION
- Last update: mason_genome version: 2.0.7 [tarball] SeqAn version: 2.3.1
June 2017 | mason_genome 2.3.1+dfsg-4 |