NAME¶
dba — characterising shared regulatory regions of genomic DNA
SYNOPSIS¶
dba [
options ... ] {
seq1 seq2 }
DESCRIPTION¶
dba - standing for Dna Block Aligner, was developped by Niclas Jareborg, Richard
Durbin and Ewan Birney for characterising shared regulatory regions of genomic
DNA, either in upstream regions or introns of genes
The idea was that in these regions there would a series of shared motifs,
perhaps with one or two insertions or deletions but between motifs there would
be any length of sequence.
The subsquent model was a 3 state model which was log-odd'd ratio to a null
model of their being no examples of a motif in the two sequences.
OPTIONS¶
- -h -help
- Show summary of options.
- -v -version
- Show version of program.
SEE ALSO¶
dnal (1), estwise (1), estwisedb (1), genewise (1), genewisedb (1), genomewise
(1), promoterwise (1), psw (1), pswdb (1), scanwise (1), scanwise_server (1).
AUTHOR¶
This manual page was written by Philipp Benner mail@philipp-benner.de for the
Debian system (but may be used by others). Permission is granted to
copy, distribute and/or modify this document under the terms of the GNU
General Public License, Version 2 any later version published by the Free
Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be
found in /usr/share/common-licenses/GPL.